A collection of my work in bioinformatics, data science, and mycology.
Built comprehensive strain management system supporting 700+ fungal lines, integrating genomic data, growth metrics, and production outcomes for commercial biomanufacturing.
Graduate capstone project integrating polygenic risk scores, clinical phenotypes, and proteomic data to predict heart failure risk using five ML models — demonstrating that multi-omics integration significantly outperforms genetic risk scores alone.
End-to-end bioinformatics pipeline characterizing transposable element structure, expression, and function in oyster mushroom — integrating RNA-seq alignment, ORF prediction, differential expression, and BLAST-based functional annotation.
Reproducible RNA-seq DEG pipeline comparing healthy vs. wild-type fungal samples — covering BAM processing, coverage-based ROI discovery, featureCounts quantification, and DESeq2 statistical analysis with full visualization outputs.